sillitoe

sge-monitor

Simple web-based app to monitor SGE activity and usage

ipmi-check-temperature

Use ipmitool to monitor room(ish) temperature

membrane-funfams

FunFam data for Orengo/Reuter collaboration

cathpy

Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)

3Cnet

3d-beacons-specifications

BioHackathon

Repository with information about the BioHackathon hosted in Paris in Nov 2018

bioschemas.github.io

Files for the Bioschemas website.

cath-human-funfam-mda

Retrieve human funfam entries from CATH (including MDA information)

cath-nr-generate-clusters

cath-structural-cluster-example

d3-sankey

Visualize flow between nodes in a directed acyclic network.

ddexreader

dircolors-solarized

This is a repository of themes for GNU ls (configured via GNU dircolors) that support Ethan Schoonover’s Solarized color scheme.

EAT

Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.

embed.protein.properties

mafft_problem

Merizo

Fast and accurate protein domain segmentation using Invariant Point Attention

mojolicious-plugin-oauth2-server

Mojolicious plugin to make it a little easier to implement an OAuth2 authorization/resource server

mutfam.github.io

Mutfam github pages

net-oauth2-authorizationserver

Module to implement core functions of an OAuth2 authorization server

nextjs-blog

orengo-baker-funfams

Generating 3D protein models from Functional Family alignments

Path-Tiny

File path utility

prettyconf

A extensible library for Settings/Code separation

stockholm-format-contact-prediction

Discussion on how to add contact predictions to STOCKHOLM format alignment files

ted-web

TED: Automated Domain Parsing of AlphaFold DB

test-github-pages

testing github pages

test-python-api

sandbox to have a look at python API frameworks

xml-rabbit-test-export

using XML::Rabbit to export documents as XML