signalbash

how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files

borf

ORF prediction using python

GeneStructureTools

ipath

Metabolic pathway visualisation with iPath3 in R

branchpointer

branchpointer_dev

Development version of branchpointer

splice_branchpoints

scripts for Machine-learning annotation of human splicing branchpoints

goreparent

R package for grouping GO terms by their common parents

ML_caret_example

chipenrichfast

Faster version of chipenrich that uses vectorised code and prefiltering of GO terms.

2016-01-18-training-prep

algae_interface

Flask-based interface to Neo4j database of chemical entity relationships

betsig.github.io

bioconda-recipes

Conda recipes for the bioconda channel.

borf_analysis

Scripts for analysing data for the Borf companion manuscript

deep-rules

Ten Quick Tips for Deep Learning in Biology

easyascp

Easy use of command line aspera connect (ascp) for ENA downloads

elsa

fread2

wrapper for fread

halpme

Personal R package with functions I use a lot

ipath_shiny

Shiny app for interacting with the ipath R package

light_penetration_model

NOMe_analysis

Scripts for analysing NOMe-Seq data

notNMD

r-novice-inflammation

Software Carpentry introduction to R for novices using inflammation data.

scholar.hasfailed.us

Google Scholar is a trans-exclusionary site. Don't use it. Help us demand change.

Shiny_MRTA

strandedness_testing_scripts

Scripts for the how_are_we_stranded_here paper