SHuang-Broad

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Broad Institute

Cambridge, MA, USA

Steve Huang's repositories

ACTG

ACTG: Nucleotide syntax highlighting

Language:PythonMIT020

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT000

canu-wdl

A customized fork of canu 1.9 for WDL-ization in the cloud

Language:C++01 9

cromwell-monitor

Generate stats for Cromwell task calls including resource utilization & estimated costs

Language:Python010

cromwell-task-monitor-bq

Scalable reporting of Cromwell task call resource monitoring data to BigQuery

Language:Go010

gatk

GATK4 development

Language:JavaNOASSERTION030

GFA-spec

Graphical Fragment Assembly (GFA) Format Specification

Language:Makefile010

graphgenomeviewer

Language:JavaScriptMIT010

hapdip

The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data

Language:JavaScript020

test-autobump

blah test

Unlicense030

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

Language:Java030

lrma-cloud-utils

DSP methods lrma team cloud utils

Language:Jupyter NotebookBSD-3-Clause020

mobster

For more details about Mobster please see

Language:JavaGPL-3.0020

moonwalk

A fast & minimal Jekyll blog theme with clean dark mode

MIT000

PublicResourceSharing

For sharing non-sensitive resources with public

020

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

Language:CMIT010

wdl

Workflow Description Language - Specification and Implementations

BSD-3-Clause000

wdl-relative-import-test

test how to make relative import work in WDL

Language:wdl000