showyourwork always re-runs everything
jfcrenshaw opened this issue · comments
I'm coming back to a paper (https://github.com/jfcrenshaw/pzflow-paper) that I need to do revisions on, and have found that suddenly showyourwork wants to re-run things all the time, including creating the conda environment.
If I run showyourwork build it starts running everything, and if I let that finish, and then immediately run showyourwork build again, it does it again!
Since I last ran this repo, the code definitely hasn't changed, and to the best of my knowledge, neither has the conda environment I used for development.
I realize this is a vague problem with a large repo -- I'm wondering if you have any advice how to go about figuring out why showyourwork is behaving this way? I'm not sure where to look. For example, I've tried doing showyourwork build --verbose, but that doesn't tell me why it wants to re-create the conda environment.
I'm not sure what's up with this, but one thing you might want to start with is deleting the .showyourwork and .snakemake directories in the root of the repository to see if that fixes things. Otherwise, what version of showyourwork are you running?
I ended up removing everything, cloning a clean repo, and starting from scratch, and it seems that this issue has resolved itself... ¯_(ツ)_/¯
I'll close this now -- sorry for the noise!