sheridancbio

annotation-tools

tools to allow annotation of vcf and maf files from a number of centers and merging the results

cbioportal

The cBioPortal for Cancer Genomics

cbioportal-core

Legacy cBioPortal Core

cbioportal-frontend

React Frontend of cBioPortal :tada:

cBioPortal-new-study-assistant

A tool to help match attributes in a new study to attributes in existing studies on the cBioPortal

clinical-data-dictionary

Clinical Attribute Web Service for retrieving clinical attribute names and metadata.

clinical-data-normalization

Tools and data relating to clinical data normalization efforts.

cmo-pipelines

code-examples

publicly accessible code examples to discuss

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

genome-nexus

Interpreting cancer genomics data 🧬

genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API

genome-nexus-java-api-client

Java API Client for Genome Nexus

genome-nexus-vep

go-mpath-proto

go-sort-demo

graphical demonstration of parallel running sort routines

knowledgesystems-k8s-deployment

Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

nats.go

Golang client for NATS, the cloud native messaging system.

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

oncotree

oncotree-transformer

pdb-annotation

Spring-Basic-RESTful-Web-Service

SpringBootOAuth2

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms