Sébastien Guizard's repositories
DensityMap
DensityMap is perl tool for the visualization of features density along chromosomes
nf-core-isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
SQANTI3-singularity
A definition file for building SQANTI3 singularity container (adapted from [joelnitta/sqanti3-docker](https://github.com/joelnitta/sqanti3-docker))
TAMA-singularity
A definition file for building TAMA singularity container
analysis-isoseq
GENE-SWitCH project Iso-Seq analysis pipeline
bioconda-recipes
Conda recipes for the bioconda channel.
bioinfo-scripts
Personnal bioinfo scripts
bioinfo-utils
Scripts for bioinfo data analysis
IsoSeq_v3-singularity
A definition file for building IsoSeq v3 singularity container
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
mixcr-singularity-container
A repo to store singularity version of mixcr docker image
multi-package-containers
Testing building mulled containers for multi-requirement tools.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
nf-co.re
Code and files for the main nf-core website.
nf-core_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core_tools
Python package with helper tools for the nf-core community.
slaMEM
Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array
smrnaseq
A small-RNA sequencing analysis pipeline
strobemers
A repository for generating strobemers and evalaution
TAMA-docker
TAMA Dockerfile
test-datasets
Test data to be used for automated testing with the nf-core pipelines
ultra
uLTRA is a long-read splice aligner with high accuracy from using a guiding annotation