sguizard / SQANTI3-singularity

A definition file for building SQANTI3 singularity container (adapted from [joelnitta/sqanti3-docker](https://github.com/joelnitta/sqanti3-docker))

SQANTI3-singularity

A definition file for building SQANTI3 singularity container (adapted from joelnitta/sqanti3-docker)

Building container

sudo singularity build sqanti3_1.6.{sif, def}

Using SQANTI3

There are two main Python scripts in SQANTI3: sqanti3_qc.py and sqanti3_RulesFilter.py. They can be run in the image as follows:

sqanti3_qc.py

singularity exec sqanti3_1.6.sif sqanti3_qc.py -h

sqanti3_RulesFilter.py

singularity exec sqanti3_1.6.sif sqanti3_RulesFilter.py -h