sgill2's repositories

software-development

A primer on software development best practices for computational chemistry

blues

Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling

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chemcoord

A python module for manipulating cartesian and internal coordinates.

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mdtraj

A modern, open library for the analysis of molecular dynamics trajectories

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openmmtools

An OpenMM toolkit with test systems, integrators, and alchemical support

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perses

Experiments with expanded ensembles to explore chemical space

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python_template

A starting template for Python programs

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smarty

SMARTS-based atom typing exploration tool

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solarized

precision color scheme for multiple applications (terminal, vim, etc.) with both dark/light modes

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yank

An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.

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