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sergivalverde / nicMSlesions

Easy multiple sclerosis white matter lesion segmentation using convolutional deep neural networks.

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Overfitting during retraining

letilessa opened this issue · comments

commented

Dear Sergi,
I full trained a model using ISBI and MICCAI dataset and got very good results. But now, I am trying to use this model for retraining the last 3 FC layers as the domain adaptation with the target images, however I am having trouble with overfitting. What would be the optimal number of epochs and patience?

Kind regards

commented

Hi @letilessa has the nicMSlesions approach been carried out with you ??,
can you help me please, I have a lot of problems doing the training and the test like this:
Thanks.
Capture22

commented

Hi @ghofranGh2022

Are you pointing the configuration options to the folder where data is?

This looks suspicious:

PRE: .ipynb_checkpoints identifying input modalities

commented

@letilessa Can you share your experience? Did it work for you finally?

commented

Mr.Sergi @sergivalverde , I don't know how to do that!!, I just created a folder that contains flair, t1, lesion data, I converted them to nifti format, then I copied the path in the configuration.cfg file and the default.cfg file!