Config file does not exist

[Nick Youngblut]

I have setup my nextflow pipeline similar to many nf-core pipelines (e.g., nf-core/mag), in which there is one main config file in the base directory of my repo (nextflow.config), and this config includes other config files stored in $REPO_BASE_DIR/conf/ via the includeConfig operator.

In other words:

nextflow.config
./conf/utils.config

...with includeConfig 'conf/utils.config' in the nextflow.config file.

When I launch the pipeline on nf-tower, I reproducibility get the following error:

The workflow execution failed to start. Exit status: 1

Essential container in task exited

Downloading plugin nf-amazon@1.11.3
N E X T F L O W  ~  version 22.10.6
Pulling MY_ORGANIZATION/MY_PIPELINE ...
 downloaded from https://github.com/MY_ORGANIZATION/MY_PIPELINE.git
No such file: Config file does not exist: https://api.tower.nf/ephemeral/config/utils.config