Beast code in Giters

selkamand's repositories

ggoncoplot

Easily Create Interactive Oncoplots

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assertions

Assertions with Beautiful and Customizable Error Messages

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blastparse

An R package for visualising blast results

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crux-docs

Documentation for CRUX, a tool for the tertiary analysis of cancer cohorts

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easydb

Easily connect to databases from R

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express

Visualise Gene-Level Expression Data

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express_precompute

A collection of precomputed datasets for automatic streaming into express visualisation module

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genomefeatures

Rust utilities for extracting genome features from variant data

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genomeguesser

Identifying reference genome and coordinate system used in variant files

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ggsaves

Wrapper for ggsave that automatically saves BOTH PDF + 300DPI PNG

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makeunique

Make Character Vectors Unique

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micrite

Tools for mining human NGS data for microbes

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microScreen

A workflow for screening WGS data for microbes

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microSleuth

A workflow for validating the presense of suspected microbes from NGS data

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mutaliskRutils

R package for parsing and visualising mutalisk signature analysis output

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mutationtypes

Utilities for Ensuring Language Describing Mutational Impact Aligns with 'SO' or 'MAF' dictionaries

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RNAProbeBuilder

A tool for building mutant/wt probes for mutations in mRNA space

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sigminerUtils

Easily Run Sigminer Analysis and Save Results to sqlite DB

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sigshared

A collection of utility functions used by many R packages in the sigverse

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sigsim

An R package for simulating decompositions from mutational signatures

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sigstash

Easily load published mutational signatures into R

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sigstats

Mathematical Operations and Transformations for Sigverse Signatures and Catalogues

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sigstory

What the Package Does (One Line, Title Case)

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sigverse

Simplifying mutational signature analysis in R

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sigvis

Visualising mutational signature analysis

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TCGAcatalogues

What the Package Does (One Line, Title Case)

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TCGAexpressDB

Easily query TCGA expression data in R

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TCGAsigDB

What the Package Does (One Line, Title Case)

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tidysigs

An R package for easily visualising tidy mutational signature data

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tidyTCGA

What the Package Does (One Line, Title Case)

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