Index error when running SGVF_PerFile_cmd.py
liuronghyw opened this issue · comments
To whom it may cancern,
Thanks for your excellent work!
When I run the following code "/public/home/hpc4011032/.conda/envs/SVGFinder_env/bin/python2.7 /public/home/hpc4011032/soft/SVGFinder/DataFiles/SGVF_PerFile_cmd.py
./ICRA/ERR2213726_kneaddata.jsdel ./IRCA/temp/ERR2213678.jsdel 150"
I found error as follows."
./ICRA/ERR2213726_kneaddata.jsdel ./IRCA/temp/ERR2213726.jsdel 150
Traceback (most recent call last):
File "/public/home/hpc4011032/soft/SVGFinder/DataFiles/SGVF_PerFile_cmd.py", line 22, in
mp = get_sample_map(args.deltaf, args.x_coverage, args.average_read_length, args.rate_param)
File "/public/home/hpc4011032/soft/SVGFinder/DataFiles/SGVFinder.py", line 37, in get_sample_map
bacid_maps[dest_id][ind1] += used_koef
IndexError: index 4917 is out of bounds for axis 0 with size 4917"
Dose anyone can help? Thanks!
Did you manage to solve the problem? I came across the same issue.