Sebastian Rhode's repositories
BioFormatsRead
This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
napari_zeiss
Use Napari Viewer to display CZI images
i2k_2022_zeiss
This repo contains all the material for the I2K 2022
PSF_XYZ_Bead_Fit
Automatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.
napari-czann-segment
Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.
czi_playground
Small python package to simplify reading CZI Image Metadata (*.czi)
Microscope_Camera_Compare
Python Tool to compare Camera Specifications
python_envs
This repository contains a collection of YML and/or requirments file and tricks to create Python Environments
500-AI-Machine-learning-Deep-learning-Computer-vision-NLP-Projects-with-code
500 AI Machine learning Deep learning Computer vision NLP Projects with code
awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
create_labels_stardist
script to create labels (for training a deep neural network) based on nucleus segmentation using StarDist (still experimental)
cytodata_2022_workshop
Scripts and tools for the Cytodata 2022 workshop
DaskFusion
Fusing image tiles with dask array's map_blocks
data-science-ipython-notebooks
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
homemade-machine-learning
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
libczi_sebi06
libCZI is an Open Source Cross-Platform C++ library to read and write CZI.
napari-chatgpt-azure
A napari plugin to process and analyse images with chatGPT that works with an Azure endpoint
napari-tiler
Tiling and merging support for napari
OAD_sebi06
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
playground_cellpose
Loose collection of scripts using cellpose
python-scripts
A repository of python scripts that come in handy in automating day-to-day tasks
simple-website-github-template
Website URL
tarrow
Time arrow prediction for live-cell microscopy