Sam Barnett's repositories
soil_phage_SIP_study
Analysis and data from a study using metagenomic-SIP to examine soil phages and carbon cycling.
MIT000
Language:CSSNOASSERTION000
Language:Jupyter NotebookMIT000
MetaSIPSim
MetaSIPSim: A tool for simulating metagenomic-SIP read libraries
landuse_comm_assembly
Analysis code for comparing bacterial community assembly properties across land use
Buckley_lab_protocols
Repository of protocols used by Buckley lab members. In addition to general wet-lab protocols, this repo will also contain example code and files for use with commonly used instruments and bioinformatics analysis.
Language:Jupyter NotebookMIT000
HTSSIP
An R package for analyzing high throughput sequence stable isotope probing data
Language:RGPL-2.0000
HR-SIP_example
Tutorials for running HR-SIP with HTSSIP package
MIT000
Buckley_Lab_SIP_project_protocols
Buckley lab protocols for conducting SIP studies
Language:HTMLMIT000