sea200k

TFforge

Identifying transcription factors involved in phenotypic differences between species

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

Best-App

收集&推荐优秀的 Apps/硬件/技巧/周边等

bio_tools

Useful bioinformatic scripts

biocode

Bioinformatics code libraries and scripts

BioKIT

a versatile toolkit for processing and analyzing diverse types of sequence data

blobology

Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)

CNVcaller

de_novo-identification

divtime

Bayesian molecular clock dating tutorial with genome-scale datasets

fastp

A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)

formatConverters

GageTracker

tool for dating gene age by micro- and macro-synteny with high speed and accuracy

gene_loss

GeneLossPipe

GWA_tutorial

A comprehensive tutorial about GWAS and PRS

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

IntegratingGenomicAndTranscriptomicDataToRevealGeneticMechanismsUnderlyingPiaoChickenRumplessTrait

MARVEL

The MARVEL assembler

MoSuMa_tools

A perl script pipeline for the compilation of molecular supermatrices for phylogenetic inference..

my-R

a small collection for my R scripts

notebook

phylogenetic-analysis-and-demographic-history-reconstruction

popgen-notes

Population genetics notes

PopLDdecay

PopLDdecay: A new simple and efficient software for Linkage Disequilibrium Decay analysis based Variant Call Format

pyspider-project

python爬虫的小demo

quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

svmu

A program to call variants from genome alignment

taxonkit

Cross-platform and Efficient NCBI Taxonomy Toolkit

tutorials

Tutorials on phylogenetic and phylogenomic inference