Genome indexing using snakemake
Copy the Snakefile and config.json to a new directory. Then edit the config.json to reflect the desired genome build.
Execute Snakemake in the directory holding the newly created Snakefile like so:
snakemake report -j 8
After the succesfull run you can inspect the content of
add_{buildkey}_to_galaxy.sh. Then as a Galaxy administrator you can execute
the script using bash to add all the indexes to your Galaxy installation.