Compilation fails on MacOS 11.2
conorotompkins opened this issue · comments
Compilation fails for me, installing from CRAN and GitHub.
CRAN error logs:
Installing package into ‘/usr/local/lib/R/4.0/site-library’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/graphlayouts_0.7.1.tar.gz'
Content type 'application/x-gzip' length 2410184 bytes (2.3 MB)
==================================================
downloaded 2.3 MB
* installing *source* package ‘graphlayouts’ ...
** package ‘graphlayouts’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -I"/usr/local/Cellar/r/4.0.3_2/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/4.0/site-library/Rcpp/include' -I'/usr/local/lib/R/4.0/site-library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/xz/include -I/usr/local/include -fPIC -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadilloForward.h:49:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo:21:
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/compiler_check.hpp:50:4: error: "*** C++11 compiler required; enable C++11 mode in your compiler, or use an earlier version of Armadillo"
#error "*** C++11 compiler required; enable C++11 mode in your compiler, or use an earlier version of Armadillo"
^
In file included from RcppExports.cpp:4:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadilloForward.h:49:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo:85:
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:149:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:150:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:151:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:161:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:162:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:163:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = true;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:173:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:174:12: error: unknown type name 'constexpr'
static constexpr bool is_col = true;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:175:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:185:12: error: unknown type name 'constexpr'
static constexpr bool is_row = true;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:186:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:187:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:197:12: error: unknown type name 'constexpr'
static constexpr bool is_row = T1::is_row;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:198:12: error: unknown type name 'constexpr'
static constexpr bool is_col = T1::is_col;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:199:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = T1::is_xvec;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:209:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:210:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:211:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘graphlayouts’
* removing ‘/usr/local/lib/R/4.0/site-library/graphlayouts’
Warning in install.packages :
installation of package ‘graphlayouts’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/9h/4jxmf82d5191ch21bc8_tbc00000gn/T/RtmpKEURJe/downloaded_packages’
GitHub error logs:
> remotes::install_github("schochastics/graphlayouts")
Downloading GitHub repo schochastics/graphlayouts@HEAD
✓ checking for file ‘/private/var/folders/9h/4jxmf82d5191ch21bc8_tbc00000gn/T/RtmpCQWdU4/remotes41d461458bc/schochastics-graphlayouts-81c700e/DESCRIPTION’ ...
─ preparing ‘graphlayouts’:
✓ checking DESCRIPTION meta-information ...
─ cleaning src
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘graphlayouts_0.7.1.tar.gz’
Installing package into ‘/usr/local/lib/R/4.0/site-library’
(as ‘lib’ is unspecified)
* installing *source* package ‘graphlayouts’ ...
** using staged installation
** libs
clang++ -I"/usr/local/Cellar/r/4.0.3_2/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/4.0/site-library/Rcpp/include' -I'/usr/local/lib/R/4.0/site-library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/xz/include -I/usr/local/include -fPIC -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadilloForward.h:49:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo:21:
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/compiler_check.hpp:50:4: error: "*** C++11 compiler required; enable C++11 mode in your compiler, or use an earlier version of Armadillo"
#error "*** C++11 compiler required; enable C++11 mode in your compiler, or use an earlier version of Armadillo"
^
In file included from RcppExports.cpp:4:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/RcppArmadilloForward.h:49:
In file included from /usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo:85:
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:149:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:150:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:151:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:161:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:162:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:163:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = true;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:173:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:174:12: error: unknown type name 'constexpr'
static constexpr bool is_col = true;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:175:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:185:12: error: unknown type name 'constexpr'
static constexpr bool is_row = true;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:186:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:187:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:197:12: error: unknown type name 'constexpr'
static constexpr bool is_row = T1::is_row;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:198:12: error: unknown type name 'constexpr'
static constexpr bool is_col = T1::is_col;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:199:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = T1::is_xvec;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:209:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:210:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/usr/local/lib/R/4.0/site-library/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:211:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘graphlayouts’
* removing ‘/usr/local/lib/R/4.0/site-library/graphlayouts’
Error: Failed to install 'graphlayouts' from GitHub:
(converted from warning) installation of package ‘/var/folders/9h/4jxmf82d5191ch21bc8_tbc00000gn/T//RtmpCQWdU4/file41d363559a2/graphlayouts_0.7.1.tar.gz’ had non-zero exit status
Session info:
> sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-apple-darwin20.2.0 (64-bit)
Running under: macOS Big Sur 10.16
Matrix products: default
LAPACK: /usr/local/Cellar/r/4.0.3_2/lib/R/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.6 magrittr_2.0.1 units_0.6-7 maptools_1.0-2 tigris_1.0 rappdirs_0.3.3
[7] uuid_0.1-4 tidyselect_1.1.0 lattice_0.20-41 R6_2.5.0 rlang_0.4.10 stringr_1.4.0
[13] httr_1.4.2 parzer_0.3.0 dplyr_1.0.4 tools_4.0.3 rgdal_1.5-23 grid_4.0.3
[19] KernSmooth_2.23-18 e1071_1.7-4 DBI_1.1.1 class_7.3-18 ellipsis_0.3.1 assertthat_0.2.1
[25] tibble_3.0.6 lifecycle_0.2.0 sf_0.9-7 crayon_1.4.0 purrr_0.3.4 vctrs_0.3.6
[31] glue_1.4.2 sp_1.4-5 stringi_1.5.3 compiler_4.0.3 pillar_1.4.7 generics_0.1.0
[37] classInt_0.4-3 foreign_0.8-81 pkgconfig_2.0.3
Maybe also related to #30 . I found a related thread on stackoverflow.
TL;DR: compile with c++11 support enabled ( for clang -std=c++11 )
I think this was caused by RStudio. The issue is described here: rstudio/rstudio#8800
I installed RStudio daily version 1.4.1554 and it resolved the compilation issue.