Sébastien Besson's repositories
omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
omero-server-jep403
A minimal OMERO.server running on strongly encapsulated JDK
ansible-role-anonymous-ftp
Anonymous FTP uploads with Docker
bio-formats-documentation
Bio-Formats documentation
bio-formats-examples
Example code that demonstrates the Bio-Formats API in Java and C++
bioformats2raw
Bio-Formats image file format to raw format converter
deployment
Deployment infrastructure for the Image Data Resource
NGFF-Converter
NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
ome-omero-roitool
OME and OMERO ROI tool
omero-blitz
Gradle project containing Ice remoting code for OMERO
omero-cli-render
OMERO command-line tool for rendering
omero-dropbox
OMERO.dropbox server for watching directories
omero-figure
An OMERO.web app for creating Figures from images in OMERO
omero-gateway-java
Gradle project containing OMERO Java Client Library
omero-ms-core
OMERO Vert.x microservice core
omero-ms-image-region
OMERO image region Vert.x asynchronous microservice server
omero-ms-pixel-buffer
OMERO pixel buffer Vert.x asynchronous microservice server
omero-ms-thumbnail
OMERO thumbnail Vert.x asynchronous microservice server
omero-zarr-pixel-buffer
OMERO Zarr Pixel Buffer Implementation
qupath-extension-omero-web
QuPath extension to work with images through OMERO's web API
zarr-java
Java implementation of the Zarr Specification
zarr-specs
Zarr core protocol for storage and retrieval of N-dimensional typed arrays