sbbauer's repositories
Targeted-Survival
Targeted estimation of heterogeneous treatment effect in observational survival analysis
awesome-ehr-deeplearning
Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.
CDS
Causal Inference using Deep Bayesian Dynamic Survival Models
CleanCPRD
Code used to setup the CPRD data prior to the analyses conducted in the DementiaDrugsCPRD and repurposing-antihypertensives-dementia repositories.
CMD_multimorbidity
Common mental disorders and additional long-term conditions
CPRD-GOLD-migrant-phenotype-validation
Code, codelists and ONS datasets used for the CPRD GOLD migrant phenotype validation study
CPRD-GOLD-migrant-sexual-and-reproductive-health-and-rights
Phenotypes and code used for analyses of sexual and reproductive health and rights (SRHR) outcomes in CPRD GOLD comparing migrants to non-migrants
CPRD-LRA
Code for an analysis of the association of lipid regulating agents (e.g. statins) with incidence of dementia outcomes
data-quality-checker
Check the basic quality of any dataset
data-wrangling-functions
Functions used for wrangling education research data
DeepIPW
Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nature Machine Intelligence).
drugprepr
An algorithm for the transparent and efficient preparation of CPRD drug data into information on individuals’ drug use over time
Electronic-Health-Records-Analysis-for-Sepsis
MIMIC-III(Medical Information Mart for Intensive Care III) dataset and PIC(Paediatric Intensive Care) dataset Analysis for Sepsis Management.
FIDDLE
FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139
Frustration-One-Year-With-R
An extremely long review of R.
MirtazapineSafetyAnalysis
Stata do-files for preparation and analysis of CPRD data for a project about the safety of mirtazapine
R_guide
R instructions for our research projects
RDrugTrajectory
An R package designed for CPRD prescription electronic healthcare records.
stacs-thesis
A LaTex class for writing theses and dissertations. Includes a skeletal thesis customised to University of St Andrews.
steroids-trial-emulation
Tutorial for a target trial emulation with a time-varying exposure, time-dependent confounding, and a time-to-event outcome. Estimation is Sequentially Doubly Robust (SDR). Application is corticosteroids effect on mortality.
survITE
SurvITE: Learning Heterogeneous Treatment Effects from Time-to-Event Data
trial_emulation_HIC
Code for trial emulation using multiple imputation
ustandown
Rmarkdown template for USTAN theses