satopan

MDSINE2

seqtime

The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics

parameters

:bar_chart: Computation and processing of models' parameters

rocker-bayesian

based on rocker/verse adds jags, rjags, r2jags, rstan, INLA, OpenBUGS, r2openbugs

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

MHBooks

vscode-R

R Extension for Visual Studio Code

finteract_streamlit

app repository for tutorial https://github.com/lightondust/streamlit_tutorial_finteract

Umibato

Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn

python_doe_kspub

Pythonで学ぶ実験計画法入門　ベイズ最適化によるデータ解析

GPy

Gaussian processes framework in python

pipx

Install and Run Python Applications in Isolated Environments

patchwork

The Composer of ggplots

book-decision-analysis-and-forecast

書籍「意思決定分析と予測の活用 基礎理論からPython実装まで」のサンプルコードとデータ

SAM

Git page for SAM R-package

PyDREAM

MT-DREAM(ZS) algorithm for model optimization, calibration, selection

FunctionalPrediction5000species

Code for paper Weber Zendrera, Sokolovska, Soula. Functional prediction of environmental variablesusing metabolic networks. Scientific Reports (2021)

or-tools

Google's Operations Research tools:

CoexistenceHoles.jl

Website for the paper "Coexistence holes characterize the assembly and disassembly of multispecies systems"

Useless_R_functions

Useless R Functions. That's it

shinyauth

Dockerfile

MicrobiomeAnalystR

A companion R package for the MicrobiomeAnalyst web server

100knocks-preprocess

データサイエンス100本ノック（構造化データ加工編）

ggseg

Plotting tool for brain atlases, in ggplot

DeepMicro

Deep representation learning for disease prediction based on microbiome data

cabinet

Project Cabinet (Japanese Only)

rmdja

R Markdown/Bookdown の日本語用フォーマット

rproject

Git/GitHub、Docker、RStudio、renv を利用した R プロジェクトのひな形

fusen

Inflate your package from a simple flat Rmd / Qmd

Estrelaetal2021_NutrientDominance

Data files and R scripts used to generate figures for Estrela et al (2021) Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments.