sapoudel

Saugat Poudel's starred repositories

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Language:RMIT631900

A flexible pipeline for complete analysis of bacterial genomes

Language:NextflowMIT40000

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Language:PythonApache-2.08900

Simple bacterial assembly and annotation pipeline

Language:NextflowMIT6000

Open source code for AlphaFold.

Language:PythonApache-2.01233800

Python package for analyzing and visualizing iModulons

Language:PythonMIT1100

Design oligos for RiboRid protocol

Language:Python100

Pan-genome construction/analysis tools centered around PATRIC and antimicrobial resistance

Language:Python500

A high-fidelity E. coli RNA-seq compendium

Language:Jupyter NotebookMIT3200

A flux balance analysis machine learning classifier for microbial GWAS

Language:Jupyter NotebookNOASSERTION1300

Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)

Language:Jupyter Notebook1800