Saugat Poudel's repositories
metabs-paper-code
Code and interim data for the manuscript "Coordination of CcpA and CodY regulators in Staphylococcus aureus USA300 strains"
TCH1516_BatchCorrection_SciData
This repo demonstrates the code used to correct batch effects in RNAseq data. It is used and shared as part of the publication: Characterization of CA-MRSA TCH1516 exposed to Nafcillin in Bacteriological and Physiological Media
amr_pangenome
Pan-genome construction/analysis tools centered around PATRIC and antimicrobial resistance
gosling_data
Staph data for gosling
SciData_RNAseq_Workflow
RNAseq Workflow used in publication "Characterization of CA-MRSA TCH1516 exposed to Nafcillin in Bacteriological and Physiological Media"
TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes
USA300GWASPUB
Results, data, model and code for the paper 'Interpreting roles of mutations associated with the emergence of S. aureus USA300 strains using transcriptional regulatory network reconstruction'