HE.Zheng-Shan's repositories
OM-HiC-scaffolding
Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
assembly-stats
Get assembly statistics from FASTA and FASTQ files
BTSearcher
BTSearcher for mac.
Chloroplast-genome-single-copy-orientation-ratio-detection
Estimate the ratio of different directions of single copy in the chloroplast genome
Chroloplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
editTools
:mag_right: Detection and analysis of RNA editing evidence from VCF data
Fastq_clean
Fastq_clean is optimised to batchly clean the NGS data from the IlluminaTM sequencer
Genome-data-of-Hanfu-apple
FASTA files of chromosomes and genes, gff files for gene models.
hello-world
just begin
LTR_retriever
A highly accurate and sensitive program to identify LTR retrotransposons
pbalign
pbalign maps PacBio reads to reference sequences and saves alignments to a BAM file
PGA
Plastid Genome Annotation
quickmerge
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
shovill
Faster SPAdes assembly of Illumina reads
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
wtdbg-1.2.8
Important update of wtdbg