Error when doing static correlation

Question

Error when doing static correlation

FCYtheFreeman opened this issue 6 years ago · comments

I was using GRETNA2.0 in matlab2013b under windows 10, when it came to the static correlation step, an error came up:

The pipeline PIPE is now being processed.
Started on 23-Dec-2018 16:33:59
user: fcyoung, host: unknown, system: windows

23-Dec-2018 16:33:59 StaticFC00001 submitted (1 run / 0 fail / 0 done / 0 left)
23-Dec-2018 16:34:14 StaticFC00001 failed (0 run / 1 fail / 0 done / 0 left)

The processing of the pipeline is terminated.
See report below for job completion status.
23-Dec-2018 16:34:14

The execution of the following job has failed :

StaticFC00001 ;

More infos can be found in the individual log files. Use the following command to display these logs :

psom_pipeline_visu('E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaLogs\FunPreproAndNetCon\','log',JOB_NAME)

All jobs have been processed, but some jobs have failed.
You may want to restart the pipeline latter if you managed to fix the problems.
Error using gretna_GUI_PreprocessInterface>RunBtn_Callback (line 1006)
\nHC001\nMATLAB is running in headless mode. Figure windows will not be
displayed.
Warning: Function assert has the same name as a MATLAB builtin. We suggest
you rename the function to avoid a potential name conflict.

To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.

Warning: psom:default: The following field(s) were ignored in the structure
job : OutputImgFile

In psom_set_defaults at 101
In psom_run_job at 111

Log of the (matlab) job : StaticFC00001
Started on 23-Dec-2018 16:34:09
User: fcyoung
host : unknown
system : windows

The job starts now !

Something went bad ... the job has FAILED !
The last error message occured was :
Index exceeds matrix dimensions.
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 118
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 45
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 45
File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line
214
File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line
128

Checking outputs

The output file or directory
E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaSFCMatrixR\rHC001.txt
has not been generated!
The output file or directory
E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaTimeCourse\HC001.txt
has not been generated!

23-Dec-2018 16:34:10 : The job has FAILED
Total time used to process the job : 1.24 sec.

ans =

Error in gui_mainfcn (line 96)
feval(varargin{:});

Error in gretna_GUI_PreprocessInterface (line 42)
gui_mainfcn(gui_State, varargin{:});

Error in
@(hObject,eventdata)gretna_GUI_PreprocessInterface('RunBtn_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uicontrol Callback

I was wandering how can I fix it.
It will be super helpful if someone could make a suggestion, thank you !

xt_qin · Answer 1 · Sun Dec 29 2019 21:45:40 GMT+0800 (China Standard Time)

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sarahejazi · Answer 2 · Sun Jun 26 2022 09:26:13 GMT+0800 (China Standard Time)

I was using GRETNA2.0 in matlab2013b under windows 10, when it came to the static correlation step, an error came up:

The pipeline PIPE is now being processed. Started on 23-Dec-2018 16:33:59 user: fcyoung, host: unknown, system: windows

23-Dec-2018 16:33:59 StaticFC00001 submitted (1 run / 0 fail / 0 done / 0 left) 23-Dec-2018 16:34:14 StaticFC00001 failed (0 run / 1 fail / 0 done / 0 left)

The processing of the pipeline is terminated. See report below for job completion status. 23-Dec-2018 16:34:14

The execution of the following job has failed :
StaticFC00001 ; 
More infos can be found in the individual log files. Use the following command to display these logs :
psom_pipeline_visu('E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaLogs\FunPreproAndNetCon\','log',JOB_NAME)
All jobs have been processed, but some jobs have failed. You may want to restart the pipeline latter if you managed to fix the problems. Error using gretna_GUI_PreprocessInterface>RunBtn_Callback (line 1006) \nHC001\nMATLAB is running in headless mode. Figure windows will not be displayed. Warning: Function assert has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.

To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.

Warning: psom:default: The following field(s) were ignored in the structure job : OutputImgFile

In psom_set_defaults at 101
In psom_run_job at 111

Log of the (matlab) job : StaticFC00001 Started on 23-Dec-2018 16:34:09 User: fcyoung host : unknown system : windows

The job starts now !

Something went bad ... the job has FAILED ! The last error message occured was : Index exceeds matrix dimensions. File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 118 File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 45 File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 45 File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line 214 File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line 128

Checking outputs

The output file or directory E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaSFCMatrixR\rHC001.txt has not been generated! The output file or directory E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaTimeCourse\HC001.txt has not been generated!

23-Dec-2018 16:34:10 : The job has FAILED Total time used to process the job : 1.24 sec.

ans =
 1
Error in gui_mainfcn (line 96) feval(varargin{:});

Error in gretna_GUI_PreprocessInterface (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)gretna_GUI_PreprocessInterface('RunBtn_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uicontrol Callback

I was wandering how can I fix it. It will be super helpful if someone could make a suggestion, thank you !

Did you find any solution for this issue?