Samuel8789's repositories
allensdk.eye_tracking
Allen Institute mouse eye tracker.
Catrex_GUI
GUI in MATLAB for calcium transients extraction from imaging experiments
course-content
Summer course content for Neuromatch Academy
FastLZeroSpikeInference
Fast Exact Spike Inference Via L0 Optimization
graph_ensemble
Conditional random field models
Holographic-Photostimulation-System
Matlab code for 3D holographic photostimulation and volumetric imaging
MATLAB-tools
A collection of useful MATLAB libraries
moco
motion correction
nn-brain
Tutorial codes for modeling brains with neural nets
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
retinotopic_mapping
visual display and analysis python code for retinotopic mapping of rodent visual cortex
STNeuroNet
Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
Stoixeion
Designed to find neuronal ensembles from calcium population recordings
ThursdayHarbor_2017_numpy_workshop
NumPy tutorial in an IPython notebook
Toolbox-Romano-et-al
Computational toolbox for analysis of calcium imaging data of neuronal populations
Volumetric-Imaging
SLM control for volumetric imaging in two-photon laser scanning microscope