samkirkham

labhub

OHSU Open Science Workshop on tools and methods for building transparency within a lab

ShapCounterfactual

Hybrid algorithm based on SEDC and SHAP for computing Evidence Counterfactuals (SHAP-Counterfactual): explaining the model predictions of any classifier using a minimal set of features, such that removing these features results in a predicted class change.

LimeCounterfactual

Hybrid algorithm based on SEDC and LIME for computing Evidence Counterfactuals (LIME-Counterfactual): explaining the model predictions of any classifier using a minimal set of features, such that removing these features results in a predicted class change.

TextGrids.jl

Reading, writing and manipulating Praat TextGrid files in Julia

DynamicalSystems.jl

Award winning software library for nonlinear dynamics and nonlinear timeseries analysis

InteractiveDynamics.jl

Fast, general-purpose interactive applications for complex systems

reacTIVision

computer vision framework for tangible interactive surfaces

HEC

Resources on how to use the HEC at Lancaster University

knot-that-easy

Mathematical knots drawing and manipulation program (written in Python/GTK+)

DeepLabCut-for-Speech-Production

Trained deep neural-net models for estimating articulatory keypoints from midsagittal ultrasound tongue videos and front-view lip camera videos using DeepLabCut. This research is by Wrench, A. and Balch-Tomes, J. (2022) (https://www.mdpi.com/1424-8220/22/3/1133) (https://doi.org/10.3390/s22031133).

gsignal

R implementation of the Octave signal package

usc_speech_mri

praatIO

A python library for working with praat, textgrids, time aligned audio transcripts, and audio files. It is primarily used for extracting features from and making manipulations on audio files given hierarchical time-aligned transcriptions (utterance > word > syllable > phone, etc).

pydub

Manipulate audio with a simple and easy high level interface

DeepLearningForAudioWithPython

Code and slides for the "Deep Learning (For Audio) With Python" course on TheSoundOfAI Youtube channel.

apex-sc-dafx

Vocal Tract Modelling by Murphy, Shelley and Ternström

superassp

A wrassp super-package that re-exports all the functionality of wrassp, and adds the ability to get Praat and MATLAB signals into SSFF format.

pysensors

PySensors is a Python package for sparse sensor placement

pysindy

A package for the sparse identification of nonlinear dynamical systems from data

VocalTractLab-dev

VocalTractLab development repo

tal-tools

Tools to process and visualise the TaL data

ultrasync

UltraSync: Synchronising audio and ultrasound by learning cross-modal embeddings

mtracker.github.io

MTracker is a tool for automatic splining tongue shapes in ultrasound images by harnessing the power of deep convolutional neural networks. It is developed at the Department of Linguistics, University of Michigan to address the need of splining a large-scale ultrasound project.

ultrasuite-tools

Tools to process the UltraSuite data

praat

Praat: Doing Phonetics By Computer

Conch-sounds

This package contains functions for converting wav files into auditory representations and comparing them

redirt

FAVE

A repository for maintaing the fave-align and fave-extract toolkits

GetContours

Matlab tool for interactively extracting tongue contours from Ultrasound movie or DICOM sequences

SuperDirt

Tidal Audio Engine