Sam Way's repositories
faculty_hiring
University faculty hiring analysis
samplotlib
matplotlib hacks
gene-coverage
Report largest fraction of coverage.
American-Gut
American Gut open-access data and IPython notebooks
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
machine-learning
Playground for learning about and evaluating machine learning techniques.
classification
Benchmarking classification techniques
coassembly
Generate coassembly test cases
example_project
demo
make_figures_great_again
MAKE FIGURES GREAT AGAIN
ml_utils
Utility scripts for interfacing QIIME with scikit-learn.
pipeline_lite
Generates scripts to run a basic sequencing pipeline.
python_to_slda
Scripts for interfacing biom tables and metadata files with slda
qiime-deploy
Tool to easily install QIIME on Linux systems
qiime-deploy-conf
configuration files to be used with the qiime-deploy packages
QIIME-Scaling
The goal of this project is to produce an estimator for runtime and memory consumption: (runtime, memory) = f(script_name, number_of_observations, number_of_samples, sparsity). This estimator will be based off of empirical results from standard test data sets (to be created, described below) and validated with real world datasets. Once in place, we can then use this estimator to a) improve resource utilization on both growler and compy b) determine what scripts to target for optimization.
research_env
Analysis of how academic environment affects individual researcher productivity.
scholar.py
A parser for Google Scholar, written in Python
university_network
Code to analyze faculty hiring at North American universities.