Giters
Sarah Gehrke (sagehrke)

sagehrke

Geek Repo

0

followers

6

following

81

stars

Company:Translational and Integrative Sciences Lab

Home Page:https://orcid.org/ 0000-0003-3245-2880

Github PK Tool:Github PK Tool

Organizations
monarch-initiative
tis-lab

Sarah Gehrke's starred repositories

phenomics-assistant

LLM retrieval augmented generation agent for Monarch.

Language:PythonLicense:MITStargazers:18Issues:0Issues:0

curategpt

LLM-driven curation assist tool (pre-alpha)

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:56Issues:0Issues:0

monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

Language:PythonStargazers:14Issues:0Issues:0

monarch-app

Monarch Initiative website and API

Language:VueLicense:BSD-3-ClauseStargazers:17Issues:0Issues:0

oai-monarch-plugin

First pass at a thin wrapper around the Monarch API and ChatGPT plugin

Language:PythonLicense:MITStargazers:13Issues:0Issues:0

monarchr

R package for easy access, manipulation, and analysis of Monarch KG data

Language:RLicense:NOASSERTIONStargazers:8Issues:0Issues:0

mondolib

Python library for mondo QC

Language:PythonLicense:MITStargazers:3Issues:0Issues:0

glyco-phenotype-ontology

An ontology module describing molecular glyco-phenotypes

Language:MakefileStargazers:2Issues:0Issues:0

monarch-owlsim-data

Language:MakefileStargazers:2Issues:0Issues:0

phenotools

Validation of phenopackets in C++

Language:C++License:MITStargazers:2Issues:0Issues:0

babelon

A format for language profiles for ontologies

Language:Jupyter NotebookLicense:MITStargazers:8Issues:0Issues:0

sri-reference-kg

Repo for generating the SRI Reference KG

Language:MakefileLicense:BSD-3-ClauseStargazers:4Issues:0Issues:0

oai-monarch-wrapper

Alpha test for a Monarch-backed plugin for ChatGPT.

Language:PythonStargazers:4Issues:0Issues:0

PhenoteFX

PhenoteFX

Language:JavaLicense:BSD-3-ClauseStargazers:5Issues:0Issues:0

kg-idg

A Knowledge Graph to Illuminate the Druggable Genome

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:9Issues:0Issues:0

pheval

A framework for empirical evaluation of phenotype matching and prioritisation

Language:PythonLicense:Apache-2.0Stargazers:12Issues:0Issues:0

phenopacket-reference-implementation

Reference java implementation for phenopackets

Language:JavaLicense:BSD-3-ClauseStargazers:6Issues:0Issues:0

linkml-phenopackets

EXPERIMENTAL rendering of phenopackets in linkml

Language:PythonStargazers:7Issues:0Issues:0

semanticsimilarity

A python library for calculating semantic similarity between patients in N3C

Language:PythonStargazers:11Issues:0Issues:0

ontorunner

Language:Jupyter NotebookLicense:CC0-1.0Stargazers:11Issues:0Issues:0

phenopacket-python

Language:PythonStargazers:8Issues:0Issues:0

blazegraph-runner

Simple CLI for Blazegraph

Language:ScalaLicense:BSD-3-ClauseStargazers:9Issues:0Issues:0

HpoTextMining

Perform text mining for identification of HPO terms in free text from scientific publication.

Language:JavaStargazers:11Issues:0Issues:0

phenogrid

The phenogrid widget

Language:JavaScriptStargazers:13Issues:0Issues:0

neat-ml

Network Embedding All the Things

Language:PythonLicense:BSD-3-ClauseStargazers:18Issues:0Issues:0

monarch-ui

The previous version of the Monarch Initiative website

Language:VueLicense:BSD-3-ClauseStargazers:17Issues:0Issues:0

owlsim-v3

Ontology Based Profile Matching

Language:JavaScriptStargazers:17Issues:0Issues:0

GENO-ontology

Repository for representing genotypes and their association with phenotypes

Language:MakefileStargazers:18Issues:0Issues:0

kboom

Bayes OWL Ontology Merging

Language:JavaStargazers:21Issues:0Issues:0

phenol

phenol: Phenotype ontology library

Language:JavaLicense:BSD-3-ClauseStargazers:23Issues:0Issues:0