Can I merge the results into one?
LynnChan99 opened this issue · comments
Recently, I am trying to use misty to deconvolute near colocalization of mydata, but I could only use 1 slice once, if I want to analyze the final results together, can I just merge them together without any speical process? Thank you so much!
Run MISTy on one sample at a time as usual. Then you can simply collect and aggregate all results with collect_results giving it a vector of paths at input as misty.results <- collect_results(c("path/to/result1", "path/to/result2", "path/to/result3")). Note that misty.results now also contains statistics about all measures across all samples which will be reflected when plotting. If interested in different analyses, you can also access them directly.
Thanks a lot for your reply. Besides, I am wondering what's the difference between juxta-view and para-view if I set the same radius to calculate? I can understand the juxta-view is based on the direct neigborhood cell-cell relationship and para-view is based on the tissue structure. But they are inferred in the same region, why the results will be so different? Thanks again!
Glad to be of help. For your question see the response here #35 (comment)