Error in `Idents<-`: ! 'value' must be a factor or vector
XIANZHE-LI opened this issue · comments
nichenet_output_agnostic <- nichenet_seuratobj_aggregate(
- seurat_obj = DCM,
- sender = "undefined",
- receiver = "CM",
- condition_colname = "group",
- condition_oi = "DCM",
- condition_reference = "healthy donor",
- expression_pct = 0.05,
- ligand_target_matrix = ligand_target_matrix,
- lr_network = lr_network,
- weighted_networks = weighted_networks,
- top_n_ligands = 80,
- top_n_targets = 500,
- lfc_cutoff = 0.1,
- assay_oi = "RNA"
- )
[1] "Read in and process NicheNet's networks"
[1] "Define expressed ligands and receptors in receiver and sender cells"
[1] "Perform DE analysis in receiver cell"
Error inIdents<-
:
! 'value' must be a factor or vector
seurate V5
I also found this problem(seurate V5)
[1] "Read in and process NicheNet's networks"
[1] "Define expressed ligands and receptors in receiver and sender cells"
[1] "Perform DE analysis in receiver cell"
Error in Idents<-
:
! 'value' must be a factor or vector
Hi,
Can both of you check that your NicheNet version is 2.1.5? This issue should have been fixed in #198, but it's possible that I overlooked some lines of code.
Hi,
Can both of you check that your NicheNet version is 2.1.5? This issue should have been fixed in #198, but it's possible that I overlooked some lines of code.