Paged-footnotes: Footnote cutoff after certain citations

[Paul C. Bauer]

We are writing our first journal article with pagedown using paginated footnotes. For some forms of citation in footnotes, the rest of the footnote text is cut off. The example rmd below should reproduce the issue. Thanks for looking into the issue!

---
title: "Issue with citations in footnotes"
shorttitle: "..."
author: "..."
date: '...'
abstract: '...'
keywords: [...]
links-to-footnotes: false
paged-footnotes: true
output: pagedown::jss_paged
knit: pagedown::chrome_print
bibliography: [packages.bib]
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(
	message = FALSE,
	warning = FALSE,
	include = FALSE
)
```

```{r include=FALSE}
knitr::write_bib(c("knitr", "rmarkdown", "pagedown"),
                 file = 'packages.bib')
```

text text text.^[Text after `[@R-knitr]` citation is shown [@R-knitr]. Text is visible.] text text text   
text text text.^[Text after `@R-knitr` citation is not shown @R-knitr. Text is not visible.] text text text       
text text text.^[Text after `[@R-knitr; @R-rmarkdown]` citation is not shown [@R-knitr; @R-rmarkdown]. Text is not visible.] text text text   


\newpage

# References

[Christophe Dervieux]

thanks for the report.

here is what I see

For first too, this is working ok it seems. For last one, the Text is not visible part is not moved into the footnotes and kept in main body.

Seems like some adjustment is required.

[Paul C. Bauer]

Strangely (in contrast to you) I get the issue for both Footnote 2 and 3 even after updating pagedown, rmarkdown and knitr.

[Christophe Dervieux]

Can you share your versions ? R , packages and Pandoc ?

[Paul C. Bauer]

Yes. Please find it below:

---

R version 4.1.2 (2021-11-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)

Matrix products: default

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] compiler_4.1.2 fastmap_1.1.0 htmltools_0.5.2 tools_4.1.2 yaml_2.2.1
[6] rmarkdown_2.11 knitr_1.37 pagedown_0.16 xfun_0.28 digest_0.6.29
[11] rlang_0.4.12 evaluate_0.14

[Christophe Dervieux]

Can you share also

rmarkdown::find_pandoc()

thanks

[Paul C. Bauer]

Below. Thank you (I think I haven't updated pandoc in a long time).

$version
[1] ‘2.14.0.3’

$dir
[1] "C:/Program Files/RStudio/bin/pandoc"

[Christophe Dervieux]

I'll try to reproduce with these information then, Pandoc is at 2.17.1.1 now you can use rstudio daily or install specific pandoc if you want to upgrade, but it should work no matter the version when this is recent enough

[Christophe Dervieux]

So that was helpful. The difference between you and me is indeed the Pandoc version. I can reproduce with 2.14.0.3.

We need to rework the Lua filter probably. Thanks for the report!

[Paul C. Bauer]

Thank you for looking into it!