Singh Lab @ Brown

pyaging

A Python-based compendium of GPU-optimized aging clocks.

MADDi

This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

SCOT

Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

AltumAge

GNN-Tumor-Seg

Using Graph Neural Networks to Segment MRIs of Brain Tumors

scNODE

scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

GrapHiC

A graph neural network based approach to impute missing Hi-C reads.

GC-MERGE

This is the repository for the long-range interaction GCNN for predicting gene expression for the Singh Lab.

gnn_microscopy_segment

Memory Efficient Semantic Segmentation of Large Microscopy Images Using Graph-based Neural Networks

OvO

QZERO

Retrieval Augmented Zero-Shot Text Classification

scGrapHiC

A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

CoRNN

Compartment prediction using Recurrent Neural Network

HistoneClocks

This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".

scRNAseq_Coexpression_Benchmark

A benchmark of existing gene co-expression estimator on scRNA-seq data.

SCOOTR

Single-cell CO-Optimal TRansport for jointly aligning cells and genomic features of single-cell multi-omic datasets

Hi-CY

scMultiOmics_Datasets

Datasets for the scGRN project

ChromAge

Private repository for the chromatin age prediction project developed by Lucas and Haider.

CliniqIR

Code for the paper: Unsupervised Diagnostic Decision Support via Information Retrieval

ML_epigenetic_features_glioblastoma