royerlab / cytoself

Self-supervised models for encoding protein localization patterns from microscopy images

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Installation

JacobNeumann88 opened this issue · comments

Hello, when attempting to use the demo py file I get an error that the modules
"
cytoself.data_loader.data_manager import DataManager
from cytoself.models import CytoselfFullModel
from cytoself.data_loader.data_generator import image_and_label_generator
from cytoself.analysis.analytics import Analytics"

Do not exist.

Have you checked if you were using the right environment that cytoself is installed?
If the issue still persists even after you reinstall everything in a clean environment, could you try installing cytoself from this repository?
https://github.com/royerlab/cytoself#for-developers

Hey, I am also getting installation issues, even though I did use the correct environment.
Cloning from git doesn't seem to work either

What issues did you get? Have you tried cytoself-pytorch branch? There may be some issues with cuda version if you use TF1.15 with newer GPUs. This pytorch version will be the mian branch.

The cytoself-pytorch is now on the main branch!

It works! Thank you :)