Chris Rorden's Lab

Chris Rorden's Lab's repositories

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

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MRIcroGL

v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

Language:PythonNOASSERTION199 9 59

spmScripts

Handy scripts for SPM

Language:MATLAB72 90

niimath

niimath - a clone of fslmaths. Try the live demo:

Language:CNOASSERTION53 6 18

MRIcroWeb

NIfTI volume rendering using WebGL

Language:JavaScriptMIT37 20

NIfTIspace

A single NIfTI image saved with all 48 spatial rotation permutations

BSD-2-Clause24 3 1

nii2meshWeb

Online NIfTI voxels to triangulated mesh conversion

Language:CNOASSERTION17 50

i2nii

Convert various image formats to NIfTI.

Language:PascalBSD-2-Clause11 40

rordenlab.github.io

Home page

Language:JavaScriptMIT5 20

nii2mesh

Convert NIfTI volume to triangulated mesh using marching cubes

Language:CNOASSERTION2 10

AphasiaResearchCohortQuery

Obsolete repository, visit the AphasiaRecoveryCohortDemo

Language:MATLABBSD-2-Clause1 30

niivue-1

a WebGL2 based NIFTI volume viewer

Language:JavaScriptBSD-2-Clause1 10

TractographyFormat

Experiments related to [new formats](https://github.com/nipy/nibabel/issues/942)

Language:MATLAB1 40

afni

Official AFNI source and documentation

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brainchop

Brainchop: In-browser 3D MRI rendering and segmentation

Language:JavaScriptMIT000

Fast-Quadric-Mesh-Simplification

WASM version of Fast Quadric Mesh Simplification

Language:C++MIT010

MeshFormatsJS

JavaScript testing for popular neuroimaging mesh formats

Language:CBSD-2-Clause010

NIFTI-Reader-JS

A JavaScript NIfTI file format reader.

Language:JavaScriptMIT000

NIfTIrgb

examples of NIfTI DT_RGB24 (red, green and blue) triplet storage relative to Analyze-style planar storage.

BSD-2-Clause030

niimath_tests

Validation tests for niimath https://github.com/rordenlab/niimath

Language:ShellBSD-2-Clause020

NiiStat

NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations

Language:MATLABGPL-2.0010

niivue

a webgl based nifti volume viewer. Uses Vuejs for making custom viewer components.

Language:JavaScript010

niivue-niimath

Example code demonstrating integrating niivue, niimath using a Web Worker

Language:JavaScriptBSD-2-Clause000

zlib

Cloudflare fork of zlib with massive performance improvements

Language:C010

zlib-ng

zlib replacement with optimizations for "next generation" systems.

Language:CZlib010