ChemSpot is a named entity recognition tool for identifying mentions of chemicals in natural language texts, including trivial names, drugs, abbreviations, molecular formulas and IUPAC entities. Since the different classes of relevant entities have rather different naming characteristics, ChemSpot uses a hybrid approach combining a Conditional Random Field with a dictionary. ChemSpot is released under the Common Public License 1.0.
https://www.informatik.hu-berlin.de/forschung/gebiete/wbi/resources/chemspot/chemspot/
rockt opened this issue · comments
It seems that some resources are not properly loaded from within the jar, i.e.,
resources/chebi/chebi_ontology_fulldepth.txt
resources/prefixes.txt
resources/phare.txt
resources/suffixes-filtered.txt
Use this.getClass().getClassLoader().getResource(PATH TO FILE) to access them.