rnaimehaom's repositories

autoshiny

R package for an automatic transformation of an R function into a Shiny app

Language:RStargazers:0Issues:0Issues:0

BanditPAM

BanditPAM C++ implementation and Python package

Language:C++License:MITStargazers:0Issues:0Issues:0

BGData

A Suite of Packages for Analysis of Big Genomic Data

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

bigstep

Stepwise Selection for Large Data Sets

Language:RStargazers:0Issues:0Issues:0

c2z

A Reference Manager in R

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

countSTAR

Simultaneous Transformation and Rounding (STAR) Models for Count-Valued Data

Language:RStargazers:0Issues:0Issues:0

dials

Tools for creating tuning parameter values

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

DNSS2

Deep learning architectures for protein secondary structure prediction (version 2)

Language:PerlStargazers:0Issues:0Issues:0

dssp

Application to assign secondary structure to proteins

Language:C++License:BSD-2-ClauseStargazers:0Issues:0Issues:0

ecr2

ecr: Evolutionary Computation in R (version 2)

Language:RStargazers:0Issues:0Issues:0
Language:RStargazers:0Issues:0Issues:0

gptstudio

GPT RStudio addins that enable GPT assisted coding, writing & analysis

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0
Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

matric

Metrics for Similarity Matrices.

Language:RLicense:BSD-3-ClauseStargazers:0Issues:0Issues:0

mmconvert

Mouse map converter R package, for converting positions between the build 39 physical map and the Cox genetic map

Language:RLicense:GPL-3.0Stargazers:0Issues:0Issues:0

MOL3022

Predicting Secondary Protein Structures

Language:PythonStargazers:0Issues:0Issues:0
Language:RStargazers:0Issues:0Issues:0

optimizeR

Unified Framework for Numerical Optimizer in R

Language:RLicense:GPL-3.0Stargazers:0Issues:0Issues:0

Pras_Server

Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone

Language:PythonStargazers:0Issues:0Issues:0

ProteinSecondaryStructure-CNN

Protein Secondary Structure predictor using Convolutional Neural Networks

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

protr

Comprehensive toolkit for generating various numerical features of protein sequences

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

PSSP

Protein Secondary Structure prediction using PSSM matrix, HMM profile, Structure length average, Word2Vec Embeddings

Language:PythonStargazers:0Issues:0Issues:0

pureseqtmr

R package to work with PureseqTM

Language:RLicense:GPL-3.0Stargazers:0Issues:0Issues:0

s4pred

A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

Language:PythonLicense:GPL-3.0Stargazers:0Issues:0Issues:0

secondary-structure-CNN-learning

This repository contains all of the code and data used to investigate the hypothesis that convolutional neural networks trained on protein sequences learn predominantly on secondary structure.

Language:Jupyter NotebookStargazers:0Issues:0Issues:0

seededlda

LDA for semisupervised topic modeling

Language:RStargazers:0Issues:0Issues:0

SparseChol

C++ and R implementation of sparse Cholesky LDL factorisation

Language:C++License:GPL-3.0Stargazers:0Issues:0Issues:0

stevemisc

Steve's Miscellaneous Functions

Language:RStargazers:0Issues:0Issues:0

triebeard

Radix trees in Rcpp and R

Language:C++License:NOASSERTIONStargazers:0Issues:0Issues:0

vitae

R Markdown Résumés and CVs

Language:RStargazers:0Issues:0Issues:0