rnaimehaom's repositories
autoshiny
R package for an automatic transformation of an R function into a Shiny app
BanditPAM
BanditPAM C++ implementation and Python package
BGData
A Suite of Packages for Analysis of Big Genomic Data
bigstep
Stepwise Selection for Large Data Sets
c2z
A Reference Manager in R
countSTAR
Simultaneous Transformation and Rounding (STAR) Models for Count-Valued Data
dials
Tools for creating tuning parameter values
DNSS2
Deep learning architectures for protein secondary structure prediction (version 2)
dssp
Application to assign secondary structure to proteins
ecr2
ecr: Evolutionary Computation in R (version 2)
gptstudio
GPT RStudio addins that enable GPT assisted coding, writing & analysis
matric
Metrics for Similarity Matrices.
mmconvert
Mouse map converter R package, for converting positions between the build 39 physical map and the Cox genetic map
MOL3022
Predicting Secondary Protein Structures
optimizeR
Unified Framework for Numerical Optimizer in R
Pras_Server
Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone
ProteinSecondaryStructure-CNN
Protein Secondary Structure predictor using Convolutional Neural Networks
protr
Comprehensive toolkit for generating various numerical features of protein sequences
PSSP
Protein Secondary Structure prediction using PSSM matrix, HMM profile, Structure length average, Word2Vec Embeddings
pureseqtmr
R package to work with PureseqTM
s4pred
A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
secondary-structure-CNN-learning
This repository contains all of the code and data used to investigate the hypothesis that convolutional neural networks trained on protein sequences learn predominantly on secondary structure.
seededlda
LDA for semisupervised topic modeling
SparseChol
C++ and R implementation of sparse Cholesky LDL factorisation
stevemisc
Steve's Miscellaneous Functions
triebeard
Radix trees in Rcpp and R
vitae
R Markdown Résumés and CVs