Richard Hakim's repositories
face-rhythm
A pipeline for extracting and interpreting facial movements from video
basic_neural_processing_modules
A bag of functions for data science
rolling-variance
Simple code for efficient calculation of online updates to moving or running variance and mean using Welford's method.
Big_Ugly_ROI_Tracker
BURT: A pipeline for tracking ROIs over sessions for calcium imaging
BMI_for_ScanImage
Some simple code to run optical Brain Machine Interfacing experiments through ScanImage & Matlab.
sparse_convolution
Sparse convolution in python
vqt
Variable Q-Transform
BMI_IDAP
Brain-machine-interface InterDay Analysis Pipeline
course-content
Summer course content for Neuromatch Academy
GCaMP_ROI_classifier
simple CNN for classifying ROIs from 2p calcium imaging
harvard_cluster_helpers
Some helper scripts and notebooks for transferring files and requesting jobs on O2 and FASRC at Harvard
NBAP
Neural-Behavior Analysis Pipeline
NMA-project
ludicrous lobsters group alpha
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
rolling_percentile
Fast rolling percentile function for python
secret_key_database
Store and encrypt keys. Simple Python library.
simclr
SimCLRv2 - Big Self-Supervised Models are Strong Semi-Supervised Learners
tensor_regression
Pytorch functions for performing tensor regression
torchinterp1d
1D interpolation for pytorch