richarddurbin

pbwt

Implementation of Positional Burrows-Wheeler Transform for genetic data

modimizer

a toolset for fast DNA read set matching and assembly using a new type of reduced kmer

hash10x

a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly

hexamer

find likely coding segments in DNA using composition-normalised hexamer tables

rotate

simple program to rotate a circular sequence to start at a given position or string

gaffer

a GFA toolkit

phynder

likelihood calculations over a tree to support ancient DNA Y chr analysis and more

ONEsv

acedb

the Sanger Institute version of the venerable genome database system

syng

syncmer graphs, and perhaps other sorts of sequence graphs

pyramus

darwintreeoflife.data

Interim data for the Darwin Tree of Life Project

DAS-SPEC

The Dagstuhl Assembly Specification Language

gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

RefVariationTaskTeam

Work on data models and APIs for graph structures that represent the human reference genome plus common human genetic variants. Includes mapping to a reference genome, and standardization of the mechanism for referring to variants.

schemas

The Data Working Group concentrates on data representation, storage, and analysis, including working with platform development partners and industry leaders to develop standards that will facilitate interoperability.

sga

de novo sequence assembler using string graphs

vg

tools for working with variation graphs