rhshah

IMPACT-Pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

iCallSV

A Framework to call Structural Variants from NGS based datasets

iAnnotateSV

iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.

CAW

Cancer Analysis Workflow: a complete open source pipeline to detect somatic variants from WGS data

rnaseq-cfu-e-2018

Clustering and differential analysis of CFU-E cells with different conditions

SVPV

Structural Variant Prediction Viewer

aws-batch-genomics

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

azure-genomics-poc

POC for Genomics on Azure

basicfiltering

Basic filtering scripts for various mutation calling tools

comut

CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

CSF_2018_Scripts

Contains Scripts Created for Plotting results of CSF project

foam

A personal knowledge management and sharing system for VSCode

genotype_variants

Project to genotype SNV, INDEL and SV.

github-readme-stats

:zap: Dynamically generated stats for your github readmes

github-stats

Halve

Stylish Two-Column Jekyll Theme

igv.js-flask

Example project for integrating igv.js and flask

lorca

Build cross-platform modern desktop apps in Go + HTML5

Marianas

Software for processing molecular barcoding (UMI)-based NGS data

Miscellaneous

Multiple DataProcessing scripts

mutation_modelling

This repo has scripts that helps to generate features for modeling mutations

notifiers

The easy way to send notifications

PIe

Precision Informatics engine (PIe)

presentations

Repository of all my public presentations

Project_BINF702

Project for BINF702

reconCNV

visualize CNV data from targeted capture based sequencing data

rhshah

rhshah.github.io

About Me

sourcerer-app

🦄 Sourcerer app makes a visual profile from your GitHub and git repositories.

sv_annotator