Roy Granit, PhD's repositories
infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
jupyter-book
Create beautiful, publication-quality books and documents from computational content.
merge-bed-batch
Run the bedtools merge command on multiple files
msigDB-To-Geneset
Script that converts MSigDB '.gmt' files into a tab-delimited gene-set ready for use in 'Genomica'
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
PathoScope
Pathoscope: Species identification and strain attribution with unassembled sequencing data
pearson.pl
Calculate the Pearson correlation between all genes in a given matrix
scDVA
An R shiny based tool used for single cell RNA-seq data visualization and analysis.
scholar.py
A parser for Google Scholar, written in Python
spaCy
đź’« Industrial-strength Natural Language Processing (NLP) in Python
vue-tagsinput
A simple tags input with typeahead (autocomplete) built with Vue.js 2.