rgasper / fastq2csv

Simple CLI App to convert .fq (FastQ) files to .csv

fastq2csv

Simple CLI App to convert .fq (FastQ) files to .csv

Won't load the entire FastQ file into memory, so should be suitable for very large files.

Handles about 12 Million fastq records (~3GB) per minute on my macbook.

python fastq2csv.py my_fq_file.fq

Pre-Commit

This repo uses pre-commit for maintaining code quality. Set it up in this repo by running pre-commit install.