reyesaldasoro / HeLa_Cell_Data

Hela-Cell-Data

Data Corresponding to HeLa-Cell-Segmentation

This repository contains only the data, both as folders with tiff images and matlab files of the HeLa cells as 2000x2000x300 that have been extracted from the larger 8000x8000x519 volumes. For code and description see below.

Parallel repository to HeLa-Cell-Segmentation

Segmentation, Measurement and Visualisation of Nuclear Envelope of HeLa Cells observed with Electron Microscope

https://github.com/reyesaldasoro/HeLa-Cell-Segmentation

Citation

This work has been published in PLOS ONE (2020) and the Journal of Imaging (2021, 2019). If you find the work or the software interesting or useful, please cite as:

C Karabağ, ML Jones, CC Reyes-Aldasoro Volumetric Semantic Instance Segmentation of the Plasma Membrane of HeLa Cells J. Imaging 2021, 7(6), 93; https://doi.org/10.3390/jimaging7060093

C Karabağ, ML Jones, CJ Peddie, AE Weston, LM Collinson, CC Reyes-Aldasoro Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures PloS one 15 (10), e0230605 https://doi.org/10.1371/journal.pone.0230605

Cefa Karabag, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, and Constantino Carlos Reyes-Aldasoro, Segmentation and Modelling the nuclear envelope of HeLa cells, J Imaging (2019), 5(9), 75 https://doi.org/10.3390/jimaging5090075