realbigws

DeepAlign

DeepAlign: the protein structure analysis toolkit

PDB_Tool

Extract structural features from original PDB file

Predict_Property

Predict protein local properties using sequence or profile information.

cwDTW

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

RaptorX_Property_Fast

RaptorX-Property: a Standalone Package for Protein Structure Property Prediction

DeepCNF_AUC

Training Conditional Random Fields (CRF) by Maximizing Area Under the ROC Curve (AUC)

DeepBound

Predict the boundary of transcript start and end from RNA-seq reads alignment

LIG_Tool

Extract ligands from original PDB file

TGT_Package

Generate A3M and TGT file from a given sequence in FASTA format.

cwDTW_nano

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping in nanopore sequencing analysis

Complex_Tool

Extract monomer and contact info from complex PDB file

DeepOpen_source

All relevant source code for protein related tools

curl_command

CURL command to call RaptorX-Property and RaptorX-Contact locally

From_CA_to_FullAtom

Given CA trace in PDB format, restore full atoms

DeepSimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

3Dmodel_test

Chiron

A basecaller for Oxford Nanopore Technologies' sequencers

cwDTW_align

Continuous Wavelet Dynamic Time Warping for DNA sequence alignment

cwDTW_genome

Continuous Wavelet Dynamic Time Warping for genome alignment

Make_NRdata

Make NR data for BLAST search

RaptorX-SS8

Protein 8-class secondary structure prediction