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rdk / p2rank

P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

Home Page:https://rdk.github.io/p2rank/

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PyMOL output file names are not quoted

davidhoksza opened this issue · comments

commented

When carrying out a prediction of a multichain protein via PrankWeb , the resulting PyMOL script does not work because the filename contains a coma and it is not quoted.

load data/pdbid_6lu7_A,C.ent.gz, protein

needs to be changed to

load "data/pdbid_6lu7_A,C.ent.gz", protein.

Using a coma in filenames should be avoided as well.

commented

Fixed on the develop branch.

Quotes have been added to all relevant places in PyMol output, but comas come from PrankWeb.