Fix R CMD CHECK notes and warnings
ramhiser opened this issue · comments
In order to update the package on CRAN, need to fix the following notes and warnings from devtools::check().
> check()
Updating sparsediscrim documentation
Loading sparsediscrim
...
Missing link or links in documentation object 'hdrda_cv.Rd':
‘ggplot2’
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Duplicated \argument entries in documentation object 'dlda':
‘x’ ‘...’
Undocumented arguments in documentation object 'dmvnorm_diag'
‘sigma’
Documented arguments not in \usage in documentation object 'dmvnorm_diag':
‘cov’
Duplicated \argument entries in documentation object 'dqda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'hdrda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'hdrda_cv':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'lda_pseudo':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'lda_schafer':
‘x’ ‘...’ ‘...’
Duplicated \argument entries in documentation object 'lda_thomaz':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'mdeb':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'mdmeb':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'mdmp':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'sdlda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'sdqda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'smdlda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'smdqda':
‘x’ ‘...’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
‘/private/var/folders/7d/pcy077cj44n0cs351w0mv6q40000gn/T/Rtmp9xXf5N/sparsediscrim.Rcheck/00check.log’
for details.
R CMD check results
0 errors | 2 warnings | 1 noteAfter fixing plot.hdrda_cv docs, remaining devtools::check() results to fix:
* checking Rd \usage sections ... WARNING
Duplicated \argument entries in documentation object 'dlda':
‘x’ ‘...’
Undocumented arguments in documentation object 'dmvnorm_diag'
‘sigma’
Documented arguments not in \usage in documentation object 'dmvnorm_diag':
‘cov’
Duplicated \argument entries in documentation object 'dqda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'hdrda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'hdrda_cv':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'lda_pseudo':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'lda_schafer':
‘x’ ‘...’ ‘...’
Duplicated \argument entries in documentation object 'lda_thomaz':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'mdeb':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'mdmeb':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'mdmp':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'sdlda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'sdqda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'smdlda':
‘x’ ‘...’
Duplicated \argument entries in documentation object 'smdqda':
‘x’ ‘...’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* DONE
Status: 1 WARNING
See
‘/private/var/folders/7d/pcy077cj44n0cs351w0mv6q40000gn/T/Rtmpr2JLnU/sparsediscrim.Rcheck/00check.log’
for details.
R CMD check results
0 errors | 1 warning | 0 notes