racalzadilla

Roberto Alejandro Calzadilla's starred repositories

Fooocus

Focus on prompting and generating

Language:PythonGPL-3.041371 322 1528

self-operating-computer

A framework to enable multimodal models to operate a computer.

Language:PythonMIT8839 124 143

gpytorch

A highly efficient implementation of Gaussian Processes in PyTorch

Language:PythonMIT3576 58 1319

pytorch-struct

Fast, general, and tested differentiable structured prediction in PyTorch

Language:Jupyter NotebookMIT1108 33 55

Seq2Seq-PyTorch

Sequence to Sequence Models with PyTorch

Language:PythonWTFPL736 22 17

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

MIT643 460

neural-combinatorial-rl-pytorch

PyTorch implementation of Neural Combinatorial Optimization with Reinforcement Learning https://arxiv.org/abs/1611.09940

Language:PythonMIT558 19 17

torch-imle

Implicit MLE: Backpropagating Through Discrete Exponential Family Distributions

Language:PythonMIT258 8 2

doc-ANNOVAR

Documentation for the ANNOVAR software

234 25 246

TorchIntegral

Integral Neural Networks in PyTorch

Language:PythonApache-2.0122 4 14

meaningful-protein-representations

Language:Jupyter NotebookBSD-3-Clause104 2 4

quarTeT

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

Language:Python100 4 39

linear_operator

A LinearOperator implementation to wrap the numerical nuts and bolts of GPyTorch

Language:PythonMIT93 8 29

GillesPy2

Modeling toolkit for biochemical simulation

Language:PythonGPL-3.073 6 394

fld

PyTorch code for FLD (Feature Likelihood Divergence), FID, KID, Precision, Recall, etc. using DINOv2, InceptionV3, CLIP, etc.

Language:Python39 1 4

mini3di

A NumPy port of the foldseek code for encoding protein structures to 3di.

Language:PythonBSD-3-Clause23 2 2

treeseq-inference

Work for the tree sequence inference paper.

Language:PythonApache-2.023 7 59

macs

Automatically exported from code.google.com/p/macs

Language:C++16 4 41

phydms

phylogenetic analyses informed by deep mutational scanning data

Language:HTMLGPL-3.014 4 26

torchplot

Plotting pytorch tensors made easy!

Language:PythonApache-2.014 10

phylokit

Phylogenetics toolkit for the PyData Ecosystem

Language:PythonMIT11 6 16

torchutils

Helpful utility APIs for PyTorch projects.

Language:PythonMIT10 1 8

phylodyn

Language:R9 10

comp_dnds

Measure evolutionary pressure by efficiently computing dN/dS according to the Nei-Gojobori method

Language:Python8 20

sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data

Language:PythonMIT4 6 161

The-Structured-Coalescent

The structured coalescent without the need to sample migration histories

Language:Java4 3 1

sc2ts-paper

Language:Jupyter Notebook3 5 87

Biomatch

Tools to match persons by demographic information

Language:C#NOASSERTION2 5 1

tspyro

Inferring geography, time (and maybe other stuff) with Pyro and tree sequences

Language:Python2 10

ZIKV_DMS_NS3_EvansLab

Deep mutational scanning of Zika virus strain MR766 nonstructural protein 3 (NS3) with Matt Evans lab

Language:Jupyter Notebook1 10