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quanted / hem_app

django app for the human exposure model

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load 'body scrub' dose data

kdionisio opened this issue · comments

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Load directly to production database, after #146 is complete

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command to use when loading data:

LOAD DATA LOCAL INFILE '/home/kdionisio/HEMDBLoad/S2D_daily_all_bodyscrub.csv' INTO TABLE hem_app_dose FIELDS TERMINATED BY ',' ENCLOSED BY '"' ignore 1 lines (person_id, @chemical, day, dir_derm_exp, dir_derm_max, dir_derm_abs, dir_inhal_exp, dir_inhal_mass, dir_inhal_max, dir_inhal_abs, dir_ingest_exp, dir_ingest_abs, hem_app_dose.release, ind_derm_exp, ind_derm_max, ind_derm_abs, ind_inhal_exp, ind_inhal_max, ind_inhal_mass, ind_inhal_abs, ind_ingest_exp, ind_ingest_abs, out_sur, out_air, drain, waste) SET created_at = NOW(), updated_at = NOW(), chemical_id = (SELECT id FROM hem_app_chemical WHERE dtxsid = @chemical), runparams_id=4;
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Loaded into DEVELOPMENT database

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currently includes 2 chemicals

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Dose results not valid; must re-run with updated code and re-loaded into DB

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Command to load dose results into DB after chemical_id matching has been done in R. Dose results are from 8/3 S2D version.

LOAD DATA LOCAL INFILE '/home/kdionisio/HEM/output/S2D/bodyscrub_OPP/Daily/S2D_daily_all_bodyscrub_OPP.csv' INTO TABLE hem_app_dose FIELDS TERMINATED BY ',' ENCLOSED BY '"' ignore 1 lines (person_id, chemical_id, day, dir_derm_exp, dir_derm_max, dir_derm_abs, dir_inhal_exp, dir_inhal_mass, dir_inhal_max, dir_inhal_abs, dir_ingest_exp, dir_ingest_abs, hem_app_dose.release, ind_derm_exp, ind_derm_max, ind_derm_abs, ind_inhal_exp, ind_inhal_max, ind_inhal_mass, ind_inhal_abs, ind_ingest_exp, ind_ingest_abs, out_sur, out_air, drain, waste) SET created_at = NOW(), updated_at = NOW(), runparams_id=4;
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loaded into prod_hem

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dose data deleted from DB due to speed issues; need to reload dose data when DB transition occurs