quadbio / Pando

Multiome GRN inference.

Home Page:https://quadbio.github.io/Pando/

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Question: Can Pando be used on an unpaired multiomic dataset?

mitchTwoTimes opened this issue · comments

Is it possible to make a GRN using Pando on an integrated object like the one described here?

Thank you

commented

Pando can be used on any object that has both RNA and ATAC modalities for each sample/cell. If one integrates two datasets and summarizes them into metacells or high-resolution clusters, this should work. We have done something similar here: https://www.nature.com/articles/s41586-022-05279-8