Quantitative Biomedical Research Center's repositories
QBRC_BulkRnaSeqDE
Analysis pipeline for bulk RNA-seq data
pathology-images-analysis-using-CNN
Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area
ProbeMapper-R
The R package client for ProbeMapper
DIGREsyn
Drug Induced Genomic Residual Effect (DIGRE) model
How_to_fork_your_repos
Repo forking steps
QBRC-Somatic-Pipeline
QBRC Somatic Mutation Calling Pipeline
SCINA
SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
TESSA
Mapping the Functional Landscape of TCR Repertoire
VAMPr
VAriant Mapping and Prediction of antimicrobial resistance
BayesSMILES
Bayesian Segmentation Modeling for Longitudinal Epidemiological Studies
CSGO
Cell Segmentation with Globally Optimized boundaries
ENA-Research
Research Behind Ensemble Network Aggregation
FDCE
FDCE app source code. Data files available at https://doi.org/10.5061/dryad.95x69p8kq.
HARMONIES
A Hybrid Approach for Microbiome Networks Inference via Exploiting Sparsity
iviewer_copilot
I-Viewer Multi-Agents Copilot Backend for Digital Pathology
iviewer_laravel_copilot
The repository includes both the I-Viewer multi-agents Copilot backend for digital pathology and a user-friendly frontend website, I-Viewer, for managing user and image data.
MB-GAN
Microbiome Simulation
MetaPrism
Taxonomical and Functional Profiling for Shotgun Metagenomic Sequencing
pMTnet
Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
seqminer
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R