Liu zifeng's repositories
bioinformatics-100-days
Learn and practice the bioinformatics skills in 100 Days.
bacterial_GWAS_tutorial
Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
bioinformatics
Utilities written for bioinformatics
Bioinformatics-Training
Bioinformatics training resources
clash_for_windows_pkg
A Windows GUI based on Clash
COPD_metaanalysis
This depository contains key scripts used to analyze the data in the manuscript "Multi-omic meta-analysis identifies functional signatures of airway microbiome in COPD" by Wang et al.
crAss-kmers
Sabrina Parlan Masters Thesis code - used to classify a human fecal metagenome fasta file as positive of negative for the presence of crAssphage
Demovir
Taxonomic classification of viruses at Order and Family level
DNA-to-BINARY
Bash program for DNA sequence to binary format translation
GCE
GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result can be used to design the sequencing strategy.
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
GWAS_threshold_scripts
This repository contains the scripts used in Kanai, M. et al. (2016)
HoneyBee-Virome-2020
Pipeline for the analysis of Bonilla-Rosso et al. 2020. "Honey bees harbor a diverse gut virome engagin in nested strain-level interactions with the microbiota" PNAS.
ieaseMusic
网易云音乐第三方
metagenome_pipeline
Pipeline for automated quality control, processing and analysis of large datasets consistent of multiple metagenome samples.
Metagenomic-benchmark
The code deposited in this site contains the necessary scripts to integrate, standardise and generate taxonomic annotation matrices at the eight basic levels of taxonomic lineage: domain, phylum, class, order, family, genus, species and subspecies. These tools provide the possibility of comparing taxonomic annotation results obtained by different methods and databases.
ngs_learning
生物信息学交流资料
Prodigal
Prodigal Gene Prediction Software
Python-100-Days
Python - 100天从新手到大师
RuijiePortalLoginShellScript
锐捷 Web 认证自动登录脚本 (Shell版，适配SCU)